gmso
0.5.0
Design Principles
Data Structures in GMSO
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gmso
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Index
A
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B
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C
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D
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E
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F
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G
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I
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J
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P
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S
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T
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U
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V
A
add_connection() (gmso.Topology method)
add_site() (gmso.SubTopology method)
(gmso.Topology method)
add_subtopology() (gmso.Topology method)
add_tag() (gmso.AngleType method)
(gmso.AtomType method)
(gmso.BondType method)
(gmso.DihedralType method)
(gmso.ImproperType method)
Angle (class in gmso)
AngleType (class in gmso)
Atom (class in gmso)
atom_class_groups (gmso.ForceField attribute)
AtomType (class in gmso)
B
Bond (class in gmso)
BondType (class in gmso)
C
construct() (gmso.Angle class method)
(gmso.AngleType class method)
(gmso.Atom class method)
(gmso.AtomType class method)
(gmso.Bond class method)
(gmso.BondType class method)
(gmso.Dihedral class method)
(gmso.DihedralType class method)
(gmso.Improper class method)
(gmso.ImproperType class method)
copy (gmso.Angle attribute)
(gmso.AngleType attribute)
(gmso.Atom attribute)
(gmso.AtomType attribute)
(gmso.Bond attribute)
(gmso.BondType attribute)
(gmso.Dihedral attribute)
(gmso.DihedralType attribute)
(gmso.Improper attribute)
(gmso.ImproperType attribute)
D
dict (gmso.Angle attribute)
(gmso.AngleType attribute)
(gmso.Atom attribute)
(gmso.AtomType attribute)
(gmso.Bond attribute)
(gmso.BondType attribute)
(gmso.Dihedral attribute)
(gmso.DihedralType attribute)
(gmso.Improper attribute)
(gmso.ImproperType attribute)
Dihedral (class in gmso)
DihedralType (class in gmso)
E
equivalent_members() (gmso.Angle method)
(gmso.Bond method)
(gmso.Dihedral method)
(gmso.Improper method)
expression (gmso.AngleType attribute)
(gmso.AtomType attribute)
(gmso.BondType attribute)
(gmso.DihedralType attribute)
(gmso.ImproperType attribute)
F
ForceField (class in gmso)
from_mbuild() (in module gmso.external)
from_parmed() (in module gmso.external)
from_template() (gmso.AngleType class method)
(gmso.AtomType class method)
(gmso.BondType class method)
(gmso.DihedralType class method)
(gmso.ImproperType class method)
from_xml() (gmso.ForceField class method)
G
get_index() (gmso.Topology method)
get_parameters() (gmso.AngleType method)
(gmso.AtomType method)
(gmso.BondType method)
(gmso.DihedralType method)
(gmso.ForceField method)
(gmso.ImproperType method)
get_potential() (gmso.ForceField method)
get_tag() (gmso.AngleType method)
(gmso.AtomType method)
(gmso.BondType method)
(gmso.DihedralType method)
(gmso.ImproperType method)
group_angle_types_by_expression() (gmso.ForceField method)
group_atom_types_by_expression() (gmso.ForceField method)
group_bond_types_by_expression() (gmso.ForceField method)
group_dihedral_types_by_expression() (gmso.ForceField method)
group_improper_types_by_expression() (gmso.ForceField method)
I
Improper (class in gmso)
ImproperType (class in gmso)
independent_variables (gmso.AngleType attribute)
(gmso.AtomType attribute)
(gmso.BondType attribute)
(gmso.DihedralType attribute)
(gmso.ImproperType attribute)
is_valid_position() (gmso.Atom class method)
J
json (gmso.Angle attribute)
(gmso.AngleType attribute)
(gmso.Atom attribute)
(gmso.AtomType attribute)
(gmso.Bond attribute)
(gmso.BondType attribute)
(gmso.Dihedral attribute)
(gmso.DihedralType attribute)
(gmso.Improper attribute)
(gmso.ImproperType attribute)
P
parameters (gmso.AngleType attribute)
(gmso.AtomType attribute)
(gmso.BondType attribute)
(gmso.DihedralType attribute)
(gmso.ImproperType attribute)
S
set_expression() (gmso.AngleType method)
(gmso.AtomType method)
(gmso.BondType method)
(gmso.DihedralType method)
(gmso.ImproperType method)
SubTopology (class in gmso)
T
to_mbuild() (in module gmso.external)
to_openmm() (in module gmso.external)
Topology (class in gmso)
U
update_angle_types() (gmso.Topology method)
update_atom_types() (gmso.Topology method)
update_bond_types() (gmso.Topology method)
update_connection_types() (gmso.Topology method)
update_dihedral_types() (gmso.Topology method)
update_forward_refs() (gmso.Angle class method)
(gmso.AngleType class method)
(gmso.Atom class method)
(gmso.AtomType class method)
(gmso.Bond class method)
(gmso.BondType class method)
(gmso.Dihedral class method)
(gmso.DihedralType class method)
(gmso.Improper class method)
(gmso.ImproperType class method)
update_improper_types() (gmso.Topology method)
update_sites() (gmso.Topology method)
update_topology() (gmso.Topology method)
V
validate_charge() (gmso.AtomType class method)
validate_mass() (gmso.AtomType class method)
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